DreEX0018710 @ danRer10
Exon Skipping
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64959867-64983196:-
Coord C1 exon
chr5:64983032-64983196
Coord A exon
chr5:64968892-64969154
Coord C2 exon
chr5:64959867-64960028
Length
263 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTTCCTCTTGTCAGATC
3' ss Score
10.61
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ACGGTGGTCTCGGGATGGACGCGGAGCTGGGTGCTGACAGCGCCCGCAGAAAGATGGAGGCGGCGGGCGAGGCGCTGGAGATCGTGCCGCTGGAAATGTATGATTCAGCCCGAGCCAAAATAGCGGCTAATCTGCGGTGGCTGTTCGCCAAAGCCTTCGGTATCG
Seq A exon
ATCACATCCCAGAGGACCTGCGGGACCCTTTCTACAGAGACCAGTATGAGCAGGAGCACATTAAGCCTCCAGTGATCCGGTTACTGCTGTCCTGTGAGCTGTACTGTCGCGTATGTGCCCTCATTCTCAAAGGAGACCAGGTGGCCTCTCTGCAGTCCCACCAGTCCGTCATCCAGGCCCTGTCTCGCAAAGGCATCTATGTCATGGAGGATGATGACACGCCGGTGACAGACTCCGATCTAACCTGTCAGCCAATCAAAATG
Seq C2 exon
AGTTCCCACATCCCCATGATTGATGCTTTGATGATGGCCTACACCGTGGAGATGATCAGCATTGAGAAGGTCGTGTCCTGCGTGAAGCGTTTCTCCACATTCAGTGCCTCCAAGGAGCTTCCCTTTGACCTCGAGGATGCAATGATCTTCTGGATCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122-'4-5,'4-2,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(5.7=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTGGTCTCGGGATGG
R:
GGTCAAAGGGAAGCTCCTTGG
Band lengths:
295-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]