RnoEX0016532 @ rn6
Exon Skipping
Gene
ENSRNOG00000017883 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:RGD Symbol;Acc:1565022]
Coordinates
chr3:3413579-3434027:-
Coord C1 exon
chr3:3433535-3434027
Coord A exon
chr3:3414497-3414759
Coord C2 exon
chr3:3413579-3413740
Length
263 bp
Sequences
Splice sites
3' ss Seq
AGTGCTTTCTCTTGCCGTAGACA
3' ss Score
8.59
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AGTGCGCCTGCGTGACGCGGCGGCGGCGCGTTAGCTCCCACCCGTTGGCAGCCGCCTCAGCTGCCGCTTCTCCGGGGCCGCGCACGCGCCGCCGCCGCCGCCCCCGGCCCGTGCTCGCACCGCGCCTGCCTCGCGCCTACCTTGGCCGGCGCTTGCCCGCTGCCGCCTGCCCGGCCTGCTCGGCGCCTTCTCGGCCTCGGCTCGGCGCCCGGAGCATGCAGCAGCAGCCTGGGTGGCGGCGGCGGCCGTGAAGTAAGGGCCGTGCGCCCGGGCGGGCGGCGCGGGAGGGCGGCGGCGTCTTTGTTGCGGCCGGGCCGCCGCGGCCTTTGTCTGCAGATGGTGGACGCGGGCGGTCGCTCTGCCGCCGAAGGCTGGAGGAGGATGGAGGCACCCCCGGAGGGCGCGGACCTGGTGCCGCTGGACCGCTACGACGCGGCGCGGGCCAAGATCGCCGCCAACCTGCAGTGGATCTGTGCGAAGGCCTATGGCCTAG
Seq A exon
ACAACATCCCTGAGGATCTCCGAGACCCGTTTTACATCGACCAGTATGAGCAGGAGCACATTAAGCCACCTGTTATTAAGCTGCTCCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTCATCTTGAAAGGGGACCAGGCAGCTACCTTGCAAGGACATCAGTCTGTCATCCAGGCCCTGTCCCGGAAGGGCATCTATGTGATGGAGAGTGATGATACCCCTGTGACAGATGCTGATCTCAGCCAGGCACCTATTAAGATG
Seq C2 exon
AGTGGCCACATGGCGATGGTGGATGCCCTGATGATGGCCTATACTGTGGAGATGATCAGCATTGAGAAGGTGGTGGCCAGTGTCAAGCGTTTTTCTACGTTCAGCGCCTCAAAAGAACTTCCTTATGACCTTGAGGATGCCATGGTGTTCTGGATCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017883_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTGCAGATGGTGGACG
R:
AAGGAAGTTCTTTTGAGGCGCT
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]