GgaEX1012717 @ galGal3
Exon Skipping
Gene
ENSGALG00000001692 | CAMSAP1
Description
NA
Coordinates
chr17:8879770-8887850:+
Coord C1 exon
chr17:8879770-8879859
Coord A exon
chr17:8887237-8887499
Coord C2 exon
chr17:8887689-8887850
Length
263 bp
Sequences
Splice sites
3' ss Seq
TTGAAACACCTTTGTTTCAGATA
3' ss Score
7.35
5' ss Seq
ATGGTTAGC
5' ss Score
3.16
Exon sequences
Seq C1 exon
TGGAGATCGTCCCTTTGGAGCTCTATGATTCAGCCAGAGCGAAAATAGCTGCTAATCTACAATGGATCTGCGCTAAAGCCTATGGAATAG
Seq A exon
ATAACGTCCCGGAGGAGCTGAAGGACCCGTTCTACATAGACCAGTATGAGCAGGAGCACATCAAGCCTCCCGTCATCAAGCTGCTGCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTGATCCTCAAGGGCGACCAGGTGGCAGCGCTGCAGGGCCACCAGTCGGTGATCCAGGCACTGTCTCGAAAGGGGATTTACGTCATGGAGAGCGATGACACACCTGTGTCTGAATCTGATCTGGGCTGCGCACCAATCAAAATG
Seq C2 exon
AGTTCTCATATGGCAATGATTGATGCCCTTATGATGGCCTACACTGTAGAAATGATCAGCATTGAAAAGGTGGTCGCTAGTGTCAAGCGTTTCTCTACATTCAGTGCCTCAAAAGAACTGCCCTATGATCTGGAGGATGCAATGGTTTTCTGGATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(6.2=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATCGTCCCTTTGGAGC
R:
CTTGTTAATCCAGAAAACCATTGCA
Band lengths:
252-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]