GgaEX1012717 @ galGal4
Exon Skipping
Gene
ENSGALG00000001692 | CAMSAP1
Description
calmodulin regulated spectrin-associated protein 1 [Source:HGNC Symbol;Acc:HGNC:19946]
Coordinates
chr17:8184742-8192844:+
Coord C1 exon
chr17:8184742-8184904
Coord A exon
chr17:8192231-8192493
Coord C2 exon
chr17:8192683-8192844
Length
263 bp
Sequences
Splice sites
3' ss Seq
TTGAAACACCTTTGTTTCAGATA
3' ss Score
7.35
5' ss Seq
ATGGTTAGC
5' ss Score
3.16
Exon sequences
Seq C1 exon
ATGGTGGATGTTGACGTTGGTGCGGGTGGAGAGAGCGGCAGAAGGAAGATGGATGCCCTGGGTGATAGCGCGGTGGAGATCGTCCCTTTGGAGCTCTATGATTCAGCCAGAGCGAAAATAGCTGCTAATCTACAATGGATCTGCGCTAAAGCCTATGGAATAG
Seq A exon
ATAACGTCCCGGAGGAGCTGAAGGACCCGTTCTACATAGACCAGTATGAGCAGGAGCACATCAAGCCTCCCGTCATCAAGCTGCTGCTGTCCAGTGAGCTGTACTGCCGTGTCTGCAGCCTGATCCTCAAGGGCGACCAGGTGGCAGCGCTGCAGGGCCACCAGTCGGTGATCCAGGCACTGTCTCGAAAGGGGATTTACGTCATGGAGAGCGATGACACACCTGTGTCTGAATCTGATCTGGGCTGCGCACCAATCAAAATG
Seq C2 exon
AGTTCTCATATGGCAATGATTGATGCCCTTATGATGGCCTACACTGTAGAAATGATCAGCATTGAAAAGGTGGTCGCTAGTGTCAAGCGTTTCTCTACATTCAGTGCCTCAAAAGAACTGCCCTATGATCTGGAGGATGCAATGGTTTTCTGGATTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001692-'0-2,'0-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0030726=CH=PU(6.2=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGATGTTGACGTTGGTG
R:
GCATCCTCCAGATCATAGGGC
Band lengths:
302-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]