MmuEX6099662 @ mm10
Exon Skipping
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25965663-25983282:-
Coord C1 exon
chr2:25982782-25983282
Coord A exon
chr2:25966686-25966948
Coord C2 exon
chr2:25965663-25965824
Length
263 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCTCTCCTGCCATAGACA
3' ss Score
9.36
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGCGCCTGCGTGACGCGGCGGCGGCGCGTTAGCTCCCACCCGTTGGCCGCCGCCTCAGCTGCCGCTTCTCCTGGGCCGCGCACGCGCCTCCGCCACCGCCCCCGGCCCGTGCTCGCACCGCGCTTGCCCCGCGCCTGCCCCGCGCCTTCCTCGGCCGGCGCTTGCCCGCCGCCGCCTGCCCGGCCCGCTCGGCGCCTTCTCGGCCTCGGCTCGGCGCCCGCAGCATGCAGCAGCCTGGGTGGCGGCGGCGGCCGTGAAGTAAGGGCCGTGCGCCCGGGCGGGCGGCGCGGGAGGGCGGCGGCGTCTTTGTTGCGGCCGGGCTGCCGCGGCCTTTGTCTGCAGATGGTGGACGCGGGCGGTCGCTGTGCCGCCGAAGGCTGGAGGAGGATGGAGGCGCCCCCGGAGGGCGCCGACCTGGTGCCGCTGGACCGCTACGACGCGGCGCGGGCCAAGATCGCCGCCAACCTGCAGTGGATCTGTGCGAAGGCCTATGGCCTAG
Seq A exon
ACAACATCCCTGAGGACCTCCGAGACCCGTTTTACATCGACCAGTATGAGCAGGAGCACATTAAGCCACCCGTTATCAAGCTTCTCCTGTCCAGTGAGCTGTATTGCCGTGTCTGCAGCCTCATCCTAAAAGGGGACCAGGTGGCTACCTTGCAAGGACACCAGTCTGTCATCCAGGCCCTGTCCCGGAAGGGCATCTATGTGATGGAGAGTGATGATACCCCTGTGACAGATGCTGACCTCAGCCAGGCACCTATTAAGATG
Seq C2 exon
AGTGGCCACATGGCGATGGTGGATGCCCTGATGATGGCCTACACTGTGGAGATGATCAGCATTGAGAAGGTGGTGGCCAGTGTCAAGCGCTTTTCTACATTCAGCGCCTCAAAAGAACTTCCTTATGACCTCGAGGATGCCATGGTATTCTGGATCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-'1-6,'1-2,12-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.057 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTCTGCAGATGGTGGACG
R:
AAGGAAGTTCTTTTGAGGCGCT
Band lengths:
292-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types