BtaEX6047205 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023933 | SEC16A
Description
SEC16 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:29006]
Coordinates
chr11:103952150-103953421:-
Coord C1 exon
chr11:103953279-103953421
Coord A exon
chr11:103952395-103952456
Coord C2 exon
chr11:103952150-103952288
Length
62 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTGTCCCTGCCTAGACC
3' ss Score
10.07
5' ss Seq
CAAGTACGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTCCGTCGAGACCCACTTCTCCCGAGAAGTTCTCGGTGCCTCACGTCTGTGCCAGGTTTGGTCCTGGGGGCCAGCTCATCAAAGTGATTCCAAACCTGCCTTCAGAAGGACAGCCTGCGCTGGTTGAAATTCACAGCATGGAG
Seq A exon
ACCTTGCTGCAGCATACACCAGAGCAGGAGGAGATGCGGGCCTTCCCAGGACCTCTCGGCAA
Seq C2 exon
AGATGAGACCCATAAAGTGGATGTTATTAATTTTGCACAGAACAAGGCTACAAAGTGTTTGCAGAATGAAAACTTAATAGACAAAGAGTCTGCGAGTCTTCTCTGGAGCTTTATTGTCCTGCTGTGCAGGCAGAACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023933-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=1.000 C2=0.064
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.0=70.8)
A:
PF129322=Sec16=FE(19.4=100)
C2:
PF129322=Sec16=FE(44.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGGTTGAAATTCACAGC
R:
AAGCTCCAGAGAAGACTCGCA
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]