RnoEX6015986 @ rn6
Exon Skipping
Gene
ENSRNOG00000019122 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:2322350]
Coordinates
chr3:3875169-3875867:-
Coord C1 exon
chr3:3875725-3875867
Coord A exon
chr3:3875415-3875476
Coord C2 exon
chr3:3875169-3875307
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCCGTCCCTCTCATTGCAGACC
3' ss Score
11.66
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
TTCCATCAAGACCGACCTCTCCTGAGAAGTTTACAGTGCCTCACGTCTGTGCCAGGTTTGGTCCTGGTGGTCAGCTCCTCAAAGTGATACCCAACCTGCCTTCAGAAGGACAGCCCGCATTGGTGGAGATCCACAGCTTAGAG
Seq A exon
ACCTTGCTGCAGCACACACCTGAGCAGGAAGAAATGCGCTCCTTCCCAGGACCTCTCGGCAA
Seq C2 exon
AGATGACACTCACAAAGTAGATGTTATTAACTTTGCACAAAACAAAGCGACAAAATGTTTGCAGAATGAAAGTTTAATTGACAAAGAGTCTGCAAGTCTTCTTTGGAACTTCATTATTCTGTTATGCAGACAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019122-'14-16,'14-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.375 A=0.905 C2=0.043
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.0=70.8)
A:
PF129322=Sec16=FE(19.4=100)
C2:
PF129322=Sec16=FE(44.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGTCAGCTCCTCAAAGTG
R:
TTTGTCGCTTTGTTTTGTGCA
Band lengths:
132-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]