MmuEX6099734 @ mm10
Exon Skipping
Gene
ENSMUSG00000026924 | Sec16a
Description
SEC16 homolog A, endoplasmic reticulum export factor [Source:MGI Symbol;Acc:MGI:2139207]
Coordinates
chr2:26428815-26429512:-
Coord C1 exon
chr2:26429374-26429512
Coord A exon
chr2:26429062-26429123
Coord C2 exon
chr2:26428815-26428953
Length
62 bp
Sequences
Splice sites
3' ss Seq
CTCTGCCCCTCTTGTTGCAGACC
3' ss Score
11.23
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATCAAGACCGACCTCTCCTGAGAAGTTTACGGTGCCTCATGTCTGTGCCAGGTTTGGTCCTGGTGGTCAGCTCCTTAAAGTGATTCCCAACCTGCCTTCAGAAGGACAGCCTGCACTGGTGGAGATCCACAGCTTAGAG
Seq A exon
ACCTTGCTGCAGCACACACCTGAGCAGGAAGAGATGCGCTCCTTCCCAGGACCTCTCGGCAA
Seq C2 exon
AGATGATACCCACAAAGTAGATGTTATTAACTTTGCACAGAACAAAGCAACAAAATGTTTGCAGAATGAAAGTTTAATTGATAAAGAGTCTGCAAGTCTTCTTTGGAAATTCATTATTCTGTTATGCAGACAGAATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026924-'22-20,'22-19,24-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.264 A=0.876 C2=0.043
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.0=70.8)
A:
PF129322=Sec16=FE(19.4=100)
C2:
PF129322=Sec16=FE(44.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGTGGTCAGCTCCTTA
R:
TGTTGCTTTGTTCTGTGCAAA
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types