GgaEX6015429 @ galGal3
Exon Skipping
Gene
ENSGALG00000002364 | SEC16A
Description
NA
Coordinates
chr17:8549881-8550619:+
Coord C1 exon
chr17:8549881-8550023
Coord A exon
chr17:8550213-8550274
Coord C2 exon
chr17:8550481-8550619
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGGTTTGTGTTTTAGACT
3' ss Score
10.31
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
TGCCCTTAAGGCCCTCAACGCCTGAGAAATTTTCAGTGCCTCACCTGTGTGCCAGGTTTGGTCCTGGGGGCTTCTTAATAAAAGTACTGCCAAACCTGCCTTCGGAAGGACAGCCAGCCCTGGTTGAAATACACAGCATGGAG
Seq A exon
ACTATGTTGCAGCATTCTCCAGAGCAAGAAGAGATGAGAGCTTTTCCTGGTCCTCTTGCTAA
Seq C2 exon
AGATGACACCCATAAAGTGGACGTTATTAACTTTGCACAAAATAAAGCTACACAATGTTTTAAAAATGAAAATTTAATTGACAAAGAATCTGCAAGTCTGCTTTGGGACTTCATTGTACTGCTGTGCAGGCAGAACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002364-'9-14,'9-13,10-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.905 C2=0.000
Domain overlap (PFAM):
C1:
PF129322=Sec16=PU(33.0=70.8)
A:
PF129322=Sec16=FE(19.4=100)
C2:
PF129322=Sec16=FE(44.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGGTTGAAATACACAGC
R:
ACAATGAAGTCCCAAAGCAGACT
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]