BtaEX6047558 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047202 | GRIN1
Description
glutamate receptor, ionotropic, N-methyl D-aspartate 1 [Source:HGNC Symbol;Acc:HGNC:4584]
Coordinates
chr11:105932137-105934289:-
Coord C1 exon
chr11:105934168-105934289
Coord A exon
chr11:105933923-105934097
Coord C2 exon
chr11:105932137-105932281
Length
175 bp
Sequences
Splice sites
3' ss Seq
TAAGCCAGCTCTCGCCCCAGGCA
3' ss Score
2.82
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
CGAGGACGACGCTGCCACCGTGTACCGCGCAGCCGCGATGCTGAACATGACGGGCTCGGGGTACGTGTGGCTGGTGGGGGAGCGCGAGATCTCGGGGAACGCCCTGCGCTACGCCCCGGACG
Seq A exon
GCATCATCGGGCTGCAGCTCATCAACGGCAAGAACGAGTCGGCGCACATCAGCGACGCCGTGGGCGTGGTGGCCCAGGCCGTGCACGAGCTGCTCGAGAAGGAGAACATCACCGACCCGCCGCGGGGCTGTGTGGGCAACACCAACATCTGGAAGACCGGGCCGCTCTTCAAGAG
Seq C2 exon
GGTTCTGATGTCTTCCAAGTATGCAGACGGGGTGACCGGCCGTGTGGAATTCAATGAGGATGGGGACCGGAAGTTTGCCAACTACAGCATCATGAACCTGCAGAACCGCAAGCTGGTACAAGTGGGCATCTACAACGGCACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047202-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(12.0=100)
A:
PF0109423=ANF_receptor=FE(17.0=100)
C2:
PF0109423=ANF_receptor=PD(10.0=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTGCCACCGTGTAC
R:
ATGCCCACTTGTACCAGCTTG
Band lengths:
244-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]