RnoEX0040004 @ rn6
Exon Skipping
Gene
ENSRNOG00000011726 | Grin1
Description
glutamate ionotropic receptor NMDA type subunit 1 [Source:RGD Symbol;Acc:2736]
Coordinates
chr3:2519462-2521159:-
Coord C1 exon
chr3:2521038-2521159
Coord A exon
chr3:2520791-2520965
Coord C2 exon
chr3:2519462-2519606
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGCTGCAGGGTCCCCTACAGGCA
3' ss Score
1.82
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
CGAGGACGACGCTGCCACAGTGTACCGCGCAGCCGCAATGCTGAACATGACGGGCTCTGGGTACGTGTGGCTGGTCGGGGAACGCGAGATCTCTGGGAACGCCCTGCGCTACGCTCCTGATG
Seq A exon
GCATCATCGGACTTCAGCTCATCAATGGCAAGAATGAGTCAGCCCACATCAGTGACGCCGTGGGCGTGGTGGCACAGGCAGTTCACGAACTCCTAGAGAAGGAGAATATCACTGACCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGACAGGACCATTGTTCAAGAG
Seq C2 exon
GGTGCTGATGTCTTCTAAGTATGCGGACGGAGTGACTGGCCGTGTGGAATTCAATGAGGATGGGGACCGGAAGTTTGCCAACTATAGTATCATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011726-'7-14,'7-11,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(12.0=100)
A:
PF0109423=ANF_receptor=FE(17.0=100)
C2:
PF0109423=ANF_receptor=PD(10.0=69.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACAGTGTACCGCGCAG
R:
TTGTAGATGCCCACTTGCACC
Band lengths:
243-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]