MmuEX6099462 @ mm10
Exon Skipping
Gene
ENSMUSG00000026959 | Grin1
Description
glutamate receptor, ionotropic, NMDA1 (zeta 1) [Source:MGI Symbol;Acc:MGI:95819]
Coordinates
chr2:25303907-25305406:-
Coord C1 exon
chr2:25305285-25305406
Coord A exon
chr2:25305038-25305212
Coord C2 exon
chr2:25303907-25304051
Length
175 bp
Sequences
Splice sites
3' ss Seq
AGCTCCAGGGTCCCGCGCAGGCA
3' ss Score
0.13
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
CGAGGACGACGCTGCCACCGTATACCGCGCAGCCGCGATGCTGAACATGACTGGCTCTGGGTACGTGTGGCTCGTCGGGGAGCGCGAGATCTCTGGGAATGCCCTGCGCTACGCTCCTGACG
Seq A exon
GCATCATCGGACTTCAGCTAATCAACGGCAAGAACGAGTCGGCCCACATCAGTGACGCTGTGGGCGTGGTGGCACAGGCAGTCCACGAGCTCCTAGAAAAGGAGAACATCACTGATCCACCGCGGGGTTGCGTGGGCAACACCAACATCTGGAAGACAGGACCACTGTTCAAGAG
Seq C2 exon
GGTGCTGATGTCTTCCAAGTATGCAGATGGAGTGACTGGCCGTGTGGAATTCAATGAGGATGGGGACCGGAAGTTTGCCAACTATAGTATCATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAATGGTACCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026959-'7-12,'7-10,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(12.8=100)
A:
PF0109423=ANF_receptor=FE(18.1=100)
C2:
PF0109423=ANF_receptor=PD(10.6=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGCTGCCACCGTATAC
R:
TTGTAGATGCCCACTTGCACC
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types