GgaEX6014743 @ galGal4
Exon Skipping
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1018738-1020985:-
Coord C1 exon
chr17:1020864-1020985
Coord A exon
chr17:1020236-1020410
Coord C2 exon
chr17:1018738-1018882
Length
175 bp
Sequences
Splice sites
3' ss Seq
CGTTCCTCTGTTCATTACAGGAG
3' ss Score
9.28
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
TGAGGATGATGCGGCAACGGTGTACAGATCAGCAGCCATGCTCAATATGACGGGCTCCGGCTACGTGTGGCTGGTGGGGGAACGGGAGATTTCGGGCAATGCCCTGCGCTACGCCCCTGATG
Seq A exon
GAGTCATCGGCTTGCAGCTCATCAATGGGAAAAATGAGTCAGCCCACATAAGTGATGCAGTGGCGGTGGTGGCCCAGGCTGTGCACGACTTGTTTGAGAAGGAGAACATCACCGACCCACCAAGGGGCTGTGTGGGCAACACCAACATCTGGAAGACGGGGCCCCTTTTCAAGAG
Seq C2 exon
GGTGTTAATGTCCTCCAAGTACTCGGAGGGTGTCACCGGACGGGTAGAATTCAATGAGGACGGGGACAGGAAGTTTGCCAATTACAGCATCATGAACCTGCAGAACCGCAAACTGGTCCAGGTTGGGATTTACAACGGTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.020
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(12.9=100)
A:
PF0109423=ANF_receptor=FE(18.2=100)
C2:
PF0109423=ANF_receptor=PD(10.7=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGGTGTACAGATCAGCA
R:
ACCGTTGTAAATCCCAACCTGG
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]