HsaEX6064224 @ hg38
Exon Skipping
Gene
ENSG00000176884 | GRIN1
Description
glutamate ionotropic receptor NMDA type subunit 1 [Source:HGNC Symbol;Acc:HGNC:4584]
Coordinates
chr9:137156669-137158523:+
Coord C1 exon
chr9:137156669-137156790
Coord A exon
chr9:137156863-137157037
Coord C2 exon
chr9:137158379-137158523
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGAGTCGCATGCTCGCCTAGGCA
3' ss Score
4.71
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
CGAGGACGATGCTGCCACTGTATACCGCGCAGCCGCGATGCTGAACATGACGGGCTCCGGGTACGTGTGGCTGGTCGGCGAGCGCGAGATCTCGGGGAACGCCCTGCGCTACGCCCCAGACG
Seq A exon
GCATCCTCGGGCTGCAGCTCATCAACGGCAAGAACGAGTCGGCCCACATCAGCGACGCCGTGGGCGTGGTGGCCCAGGCCGTGCACGAGCTCCTCGAGAAGGAGAACATCACCGACCCGCCGCGGGGCTGCGTGGGCAACACCAACATCTGGAAGACCGGGCCGCTCTTCAAGAG
Seq C2 exon
AGTGCTGATGTCTTCCAAGTATGCGGATGGGGTGACTGGTCGCGTGGAGTTCAATGAGGATGGGGACCGGAAGTTCGCCAACTACAGCATCATGAACCTGCAGAACCGCAAGCTGGTGCAAGTGGGCATCTACAATGGCACCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000176884-'14-16,'14-13,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.095 C2=0.000
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(16.3=100)
A:
PF0109423=ANF_receptor=FE(17.0=100)
C2:
PF0109423=ANF_receptor=PD(10.0=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGCTGCCACTGTATACCG
R:
TTGTAGATGCCCACTTGCACC
Band lengths:
251-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains