DreEX0036196 @ danRer10
Exon Skipping
Gene
ENSDARG00000025728 | grin1b
Description
glutamate receptor, ionotropic, N-methyl D-aspartate 1b [Source:ZFIN;Acc:ZDB-GENE-051202-2]
Coordinates
chr5:29030289-29031937:-
Coord C1 exon
chr5:29031816-29031937
Coord A exon
chr5:29030934-29031108
Coord C2 exon
chr5:29030289-29030433
Length
175 bp
Sequences
Splice sites
3' ss Seq
TAATGTTGTCAACTGGGCAGGCT
3' ss Score
1.68
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
TGAAGACGAAGCCGCGGCCATTTATAAAGTGGCACGCCAGCTCAATATGACAGGCTCTGGTTACGTGTGGCTGGTTGGAGAAAGGGAGATGTCTGGTAAAGCACTGAGTGAAGCCCCAGATG
Seq A exon
GCTTGCTCGGCCTCCAGCTAATCAATGGCAAGAACGAGTCTGCGCACATCTACGATGCCGTGGCTGTGGTGGCCCAGTCCATCCAGGAGCTCTTTGAGAAGGAGAATATCACAGAGCCTCCTCGAGGCTGTGTTGGCAATACAAACATCTGGAAGACTGGCCCACTCTTCAAACG
Seq C2 exon
AGTGCTGATGTCATCCAAGTATCCAGATGGCCTGACAGGCCGCGTGGAGTTTAATGATGACGGAGACAGGAGGTTCGCCCACTACAGCATTCTGAACTACCAGAAAACCCGGCTGGTGCAAGTGGGCGTCTACAATGGCTCGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025728-'5-7,'5-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.041
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(12.0=100)
A:
PF0109423=ANF_receptor=FE(17.0=100)
C2:
PF0109423=ANF_receptor=PD(10.0=69.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGCGGCCATTTATAAAGT
R:
CATTGTAGACGCCCACTTGCA
Band lengths:
250-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]