GgaEX6014743 @ galGal3
Exon Skipping
Gene
ENSGALG00000008898 | Q6R6I2_CHICK
Description
NA
Coordinates
chr17:1409763-1412010:-
Coord C1 exon
chr17:1411889-1412010
Coord A exon
chr17:1411261-1411435
Coord C2 exon
chr17:1409763-1409907
Length
175 bp
Sequences
Splice sites
3' ss Seq
CGTTCCTCTGTTCATTACAGGAG
3' ss Score
9.28
5' ss Seq
GAGGTAACT
5' ss Score
8.77
Exon sequences
Seq C1 exon
TGAGGATGATGCGGCAACGGTGTACAGATCAGCAGCCATGCTCAATATGACGGGCTCCGGCTACGTGTGGCTGGTGGGGGAACGGGAGATTTCGGGCAATGCCCTGCGCTACGCCCCTGATG
Seq A exon
GAGTCATCGGCTTGCAGCTCATCAATGGGAAAAATGAGTCAGCCCACATAAGTGATGCAGTGGCGGTGGTGGCCCAGGCTGTGCACGACTTGTTTGAGAAGGAGAACATCACCGACCCACCAAGGGGCTGTGTGGGCAACACCAACATCTGGAAGACGGGGCCCCTTTTCAAGAG
Seq C2 exon
GGTGTTAATGTCCTCCAAGTACTCGGAGGGTGTCACCGGACGGGTAGAATTCAATGAGGACGGGGACAGGAAGTTTGCCAATTACAGCATCATGAACCTGCAGAACCGCAAACTGGTCCAGGTTGGGATTTACAACGGTAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.020
Domain overlap (PFAM):
C1:
PF0109423=ANF_receptor=FE(14.9=100)
A:
PF0109423=ANF_receptor=FE(21.0=100)
C2:
PF0109423=ANF_receptor=PD(12.3=69.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACGGTGTACAGATCAGCA
R:
ACCGTTGTAAATCCCAACCTGG
Band lengths:
248-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]