BtaEX6047767 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047998 | COL5A1
Description
collagen, type V, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2209]
Coordinates
chr11:106897436-106899051:-
Coord C1 exon
chr11:106899007-106899051
Coord A exon
chr11:106898470-106898523
Coord C2 exon
chr11:106897436-106897489
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGCTCTTGTCTGTCCCCAGGGA
3' ss Score
11.23
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCAACTCTGGAGGCGATGGCCCGGCCGGCCCTCCAGGTGAACGG
Seq A exon
GGACCCAACGGACCCCAAGGACCCACGGGGTTCCCTGGACCAAAGGGCCCCCCG
Seq C2 exon
GGGCCCCCAGGCAAGGACGGGCTCCCGGGGCACCCTGGACAGCGAGGCGAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047998-'42-48,'42-47,43-48=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(17.1=80.0),PF0139113=Collagen=FE(19.4=100)
A:
PF0139113=Collagen=FE(23.6=100)
C2:
PF0139113=Collagen=FE(23.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCTGGAGGCGATGGC
R:
TCTCGCCTCGCTGTCCAG
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]