RnoEX6016128 @ rn6
Exon Skipping
Gene
ENSRNOG00000008749 | Col5a1
Description
collagen type V alpha 1 chain [Source:RGD Symbol;Acc:70920]
Coordinates
chr3:6540336-6542322:+
Coord C1 exon
chr3:6540336-6540380
Coord A exon
chr3:6541099-6541152
Coord C2 exon
chr3:6542269-6542322
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGACATGCTCTGTTCCCAGGGA
3' ss Score
7.85
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGCAACTCAGGAGGTGATGGCCCAGCCGGCCCTCCTGGTGAGCGG
Seq A exon
GGACCCAATGGACCCCAAGGCCCCACCGGCTTCCCTGGACCTAAGGGTCCCCCG
Seq C2 exon
GGTCCACCAGGCAAGGACGGGCTCCCCGGACATCCTGGGCAGAGAGGGGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008749-'58-44,'58-43,59-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.7=73.3),PF0139113=Collagen=FE(17.5=100)
A:
PF0139113=Collagen=FE(21.2=100)
C2:
PF0139113=Collagen=FE(23.6=100),PF0139113=Collagen=PU(11.6=61.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAGGAGGTGATGGCCC
R:
GTCTCCCCTCTCTGCCCAG
Band lengths:
95-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]