GgaEX1016853 @ galGal3
Exon Skipping
Gene
ENSGALG00000002546 | Q90689_CHICK
Description
NA
Coordinates
chr17:8216779-8218125:+
Coord C1 exon
chr17:8216779-8216823
Coord A exon
chr17:8217425-8217478
Coord C2 exon
chr17:8218072-8218125
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCCTCGTTTTGTATCCCAGGGA
3' ss Score
8.35
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGCAACTCTGGTGGTGATGGCCCCCCTGGTCCTCCTGGCGAACGG
Seq A exon
GGACCACCAGGGCCTCAAGGACCAACCGGATTTCCTGGACCAAAAGGCCCCCCT
Seq C2 exon
GGTCCTCCTGGGAAGGATGGATTGCCTGGTCACCCCGGACAGAGAGGAGAAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002546-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.5=100)
A:
PF0139113=Collagen=FE(20.0=100)
C2:
PF0139113=Collagen=FE(28.8=100),PF0139113=Collagen=PU(7.0=27.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCTGGTGGTGATGGCC
R:
GTTTCTCCTCTCTGTCCGGGG
Band lengths:
96-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]