MmuEX6099929 @ mm10
Exon Skipping
Gene
ENSMUSG00000026837 | Col5a1
Description
collagen, type V, alpha 1 [Source:MGI Symbol;Acc:MGI:88457]
Coordinates
chr2:27996869-27998779:+
Coord C1 exon
chr2:27996869-27996913
Coord A exon
chr2:27997563-27997616
Coord C2 exon
chr2:27998726-27998779
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGGATGTTCTCTGTTCCCAGGGA
3' ss Score
9.09
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGCAACTCCGGAGGTGATGGCCCAGCTGGCCCTCCTGGTGAACGG
Seq A exon
GGACCCAACGGACCCCAAGGTCCCACCGGCTTTCCTGGACCCAAGGGTCCCCCG
Seq C2 exon
GGCCCACCAGGCAAGGACGGACTCCCTGGACACCCTGGGCAGAGAGGGGAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026837-'51-44,'51-43,52-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(14.1=73.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTGATGGCCCAGCT
R:
GTCTCCCCTCTCTGCCCAG
Band lengths:
89-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types