BtaEX6048015 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14939059-14939671:-
Coord C1 exon
chr9:14939522-14939671
Coord A exon
chr9:14939321-14939440
Coord C2 exon
chr9:14939059-14939223
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGCCAGTGGTGTCCTTTCAGCCC
3' ss Score
6.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGATGGAGTGTCTCACCCGGGCTGAAGCAGACATCGTGCTGCTGGTGGATGGATCGTGGAGCATCGGCCGGGCGAACTTTAGAACCGTCAGGAGCTTCATTTCTCGTATTGTGGAAGTCTTTGAGATTGGCCCCAAAAGAGTACAGATTG
Seq A exon
CCCTCGCGCAGTATAGTGGGGACCCCAGAACAGAGTGGCAGCTAAATGCTCACAAAGACAAGAAGAGCTTGCTGCAGGCCGTGGCGAACCTGCCTTACAAAGGAGGCAACACCCTCACAG
Seq C2 exon
GGATGGCCTTGAATTTCATTCGCCAGCAGAGCTTCAAGACCCAAGCTGGCATGAGACCTCGAGCTCGAAAAATCGGTGTTCTTATCACTGATGGAAAATCCCAGGATGATGTTGAGGCACCTTCCAAAAAACTCAAGGATGAAGGCGTGGAACTGTTTGCCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'17-22,'17-21,18-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.089
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=78.4)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGATCGTGGAGCATC
R:
CCACGCCTTCATCCTTGAGTT
Band lengths:
256-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]