MmuEX6067466 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79677994-79678610:-
Coord C1 exon
chr9:79678461-79678610
Coord A exon
chr9:79678259-79678378
Coord C2 exon
chr9:79677994-79678158
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTCCATGCTGTTATTTTTAGCTC
3' ss Score
6.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATGGATTGTCTCACCAGAGCTGAAGCAGACATTGTGTTGCTGGTGGATGGGTCATGGAGCATCGGCCGTGCAAATTTTAGAACTGTGCGAAGCTTCATTTCTCGTATTGTAGAAGTCTTTGAAATTGGCCCCAAAAGAGTACAAATTG
Seq A exon
CTCTCGCTCAGTACAGTGGAGACCCCAGAACAGAGTGGCAGTTAAATGCTCATAGAGACAAGAAGAGTTTATTACAGGCTGTGGCGAACTTACCATACAAAGGAGGAAATACCCTCACAG
Seq C2 exon
GCATGGCTTTGAATTTCATTCGCCAACAGAGCTTCAAGACTCAAGCTGGCATGAGGCCTCGTGCTCGCAAAATTGGAGTTCTCATTACCGATGGAAAATCACAAGATGATGTGGAGGCTCCATCCAAGAAACTCAAGGATGAAGGCGTGGAGCTGTTTGCTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'30-26,'30-25,31-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.049 C2=0.089
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=78.4)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGGGTCATGGAGCATC
R:
CTCCACGCCTTCATCCTTGAG
Band lengths:
258-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types