RnoEX6036658 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87115394-87116008:-
Coord C1 exon
chr8:87115859-87116008
Coord A exon
chr8:87115658-87115777
Coord C2 exon
chr8:87115394-87115558
Length
120 bp
Sequences
Splice sites
3' ss Seq
CATCTATGCGGTCATTTCAGCTC
3' ss Score
5.12
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGATGGAATGTCTCACCAGAGCTGAAGCAGACATTGTGTTGCTGGTGGATGGGTCATGGAGCATTGGCCGCGCAAATTTTAGAACTGTGCGAAGCTTCATCTCTCGTATCGTGGAAGTCTTTGAAATCGGCCCCAAGAGAGTACAAATTG
Seq A exon
CTCTCGCTCAGTACAGTGGAGACCCCAGAACAGAGTGGCACCTAAACGCTCATAGAGACAAGAAGAGTTTGTTACAGGCTGTGGCGAACTTGCCGTATAAGGGAGGAAACACCCTCACAG
Seq C2 exon
GCATGGCTTTGAATTTCATTCGCCAACAGAGCTTCAAGACTCAAGCTGGCATGCGGCCTCGTGCTCGCAAAATTGGAGTTCTCATTACCGATGGAAAATCACAGGATGATGTGGAGGCTCCATCCAAGAAGCTCAAGGATGAAGGTGTAGAGCTGTTTGCTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'31-38,'31-37,32-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.089
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=78.4)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTGTTGCTGGTGGATGGG
R:
TGAGCTTCTTGGATGGAGCCT
Band lengths:
253-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]