GgaEX6031713 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80252958-80254021:+
Coord C1 exon
chr3:80252958-80253107
Coord A exon
chr3:80253191-80253310
Coord C2 exon
chr3:80253857-80254021
Length
120 bp
Sequences
Splice sites
3' ss Seq
GCAATAATGGCTTTTTCCAGGTC
3' ss Score
6.48
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTTTAGAATGTAGAACCAGAGCAGAAGCTGATATCGTGCTACTGGTGGATGGCTCATGGAGTATCGGGAGGCCAAATTTTAAAACTGTCAGGAACTTCATTTCCCGTATTGTTGAAGTTTTTGATATTGGTCCTGACAAAGTACAGATTG
Seq A exon
GTCTTGCACAGTATAGCGGAGATCCCAGGACAGAATGGAATCTCAATGCTTACCGAACGAAAGAGGCTTTGTTAGAGGCAGTAACCAACTTACCATACAAAGGAGGCAATACTCTAACAG
Seq C2 exon
GAATGGCCTTGGATTTCATCTTAAAAAACAACTTTAAACAAGAAGCAGGCTTGAGGCCCAGAGCTCGCAAAATTGGTGTTCTCATTACTGATGGTAAATCACAAGACGACGTAGTGACCCCTTCAAGAAGACTCAGAGATGAGGGAGTAGAACTTTATGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908-'39-32,'39-31,40-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.089
Domain overlap (PFAM):
C1:
PF0009223=VWA=PU(23.1=78.4)
A:
PF0009223=VWA=FE(23.1=100)
C2:
PF0009223=VWA=FE(31.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATATCGTGCTACTGGTGG
R:
TTGAAGGGGTCACTACGTCGT
Band lengths:
250-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]