BtaEX6048028 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14920521-14922367:-
Coord C1 exon
chr9:14922238-14922367
Coord A exon
chr9:14921083-14921222
Coord C2 exon
chr9:14920521-14920650
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATGCTTTCTGTGCATTTCAGAAC
3' ss Score
9.02
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
ACCACTATAGGAGGACGGCAGAACAGTGTTCTGCTGCAGAAGCTGAAGCCTGACACTCCTTACACCATCACTGTGTCCTCCCTGTATCCGGACGGCGAAGGTGGTCGCATGACGGGAAGAGGCAAGACCA
Seq A exon
AACCTTTGAATACCGTGAGGAACCTCAGAGTGTACGACCCTTCCACCAGCAGTTTGAATGTTCGCTGGGACCACGCTGAGGGCAGTCCTCGCCAGTACAAGCTCTTCTACGCACCCACAGCAGGGGGCCCGGAGGAACTG
Seq C2 exon
GTACCAATCCCTGGGAATACCAATTATGCCATTCTTAGGAATCTACAGCCGGATACCCAATACACCGTTACAGTGGTGCCTGTTTATTCTGAAGGTGACGGAGGACGCACGTCAGATACTGGAAGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'32-36,'32-35,33-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.795 A=0.638 C2=0.773
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.9=81.8)
A:
PF0004116=fn3=PU(52.4=91.5)
C2:
PF0004116=fn3=PD(45.1=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGGCAGAACAGTGTTC
R:
CCTTCCAGTATCTGACGTGCG
Band lengths:
246-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]