GgaEX0023387 @ galGal4
Exon Skipping
Gene
ENSGALG00000015908 | COL12A1
Description
collagen alpha-1(XII) chain precursor [Source:RefSeq peptide;Acc:NP_990352]
Coordinates
chr3:80265755-80268354:+
Coord C1 exon
chr3:80265755-80265884
Coord A exon
chr3:80266816-80266955
Coord C2 exon
chr3:80268225-80268354
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGTTTATTGTCCTGTTTCAGAAC
3' ss Score
8.75
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
ACCATGGTTGGTGGGCGACAGAACAGTGTAGTAATACAGAAGCTGCAGCCTGATACACCATATGCTATTACTGTATCATCGATGTATGCGGATGGTGAAGGAGGTCGAATGACAGGACGAGGCAGAACCA
Seq A exon
AACCTCTCACTACTGTGAAGAACATGCTAGTTTATGACCCGACCACCAGTACTCTGAATGTGCGTTGGGATCATGCAGAAGGAAATCCTCGCCAGTACAAAGTGTTTTATAGACCTACAGCTGGAGGTGCAGAAGAAATG
Seq C2 exon
ACCACAGTACCAGGAAACACAAACTATGTTATCCTCAGATCTCTTGAACCCAACACACCTTACACTGTAACTGTGGTTCCAGTTTTCCCAGAAGGGGATGGTGGACGTACAACTGATACTGGAAGAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015908_MULTIEX2-4/7=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.702 C2=0.818
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.9=81.8)
A:
PF0004116=fn3=PU(53.1=91.5)
C2:
PF0004116=fn3=PD(44.4=81.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTGGTGGGCGACAGAA
R:
CAGTTGTACGTCCACCATCCC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]