RnoEX6036664 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87091334-87093361:-
Coord C1 exon
chr8:87093232-87093361
Coord A exon
chr8:87091892-87092028
Coord C2 exon
chr8:87091334-87091463
Length
137 bp
Sequences
Splice sites
3' ss Seq
GTACTTCCTGTGAATTCCAGAAC
3' ss Score
6.53
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
ACCACAGTAGGAGGACGGCAGAACAGCGTGGTCCTGCAGAAACTGAAGCCCGACAGTCCGTACACCATCACCGTGTCATCCCAGTATCCTGATGGTGAAGGCGGCCGGATGACTGGAAGGGGCAAAACTA
Seq A exon
AACCTCTGAATACCGTGAGGAATTTGAGAGTGTATGACCCATCTACCAGCACTTTGAGTGTTCGCTGGGACCATGCAGAAGGCAATCCTCGCCAGTACAAACTCTTCTATGCCCCAGCCGGTGGTCCAGAAGAACTG
Seq C2 exon
GTACCAATCCCTGGGAATACCAACTATGCCATTCTTAGGAACCTGCAGCCAGATACTCCATACACTGTCACAGTGGTTCCTGTCTATGCAGAAGGTGACGGCGGGCGCACATCAGATACTGGAAGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'48-56,'48-55,49-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.955 A=0.630 C2=0.795
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.9=81.8)
A:
PF0004116=fn3=PU(51.9=91.3)
C2:
PF0004116=fn3=PD(45.7=84.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGGAGGACGGCAGAACAG
R:
TTCCAGTATCTGATGTGCGCC
Band lengths:
249-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]