MmuEX6067480 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79651382-79653443:-
Coord C1 exon
chr9:79653314-79653443
Coord A exon
chr9:79651935-79652074
Coord C2 exon
chr9:79651382-79651511
Length
140 bp
Sequences
Splice sites
3' ss Seq
GTACTTCCTGTGTATTCCAGAAC
3' ss Score
8.62
5' ss Seq
CTGGTAATT
5' ss Score
5.99
Exon sequences
Seq C1 exon
ATCACAGTAGGAGGACGGCAGAACAGCGTGCTCCTGCAGAAACTGAAGCCTGACACTCCATACACCATCACGGTGTATTCCCAGTATCCCGATGGTGAAGGTGGCCGGATGACCGGAAGGGGAAAGACCA
Seq A exon
AACCTCTGAATACCGTGAGGAATTTGAGAGTGTATGACCCGTCTACCAGCTCTTTGAGTGTCCGCTGGGACCATGCAGAAGGCAATCCTCGTCAGTACAAACTCTTTTATGCCCCAACATCAGGTGGCCCAGAAGAACTG
Seq C2 exon
GTCCCAATCCCCGGGAATACCAACTATGCCATTCTTAGGAACCTGCAGCCAGATACTCCATACACCATCACAGTGGTTCCGGTCTATACAGAAGGTGATGGCGGGCGCACATCAGATACTGGAAGGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'44-45,'44-44,45-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=0.596 C2=0.773
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(43.9=81.8)
A:
PF0004116=fn3=PU(52.4=91.5)
C2:
PF0004116=fn3=PD(45.1=84.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTAGGAGGACGGCAGAACAG
R:
TTCCAGTATCTGATGTGCGCC
Band lengths:
249-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types