BtaEX6050101 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031917 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr9:92846553-92853539:+
Coord C1 exon
chr9:92846553-92846632
Coord A exon
chr9:92847696-92847813
Coord C2 exon
chr9:92853408-92853539
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACACTTTTTTTTCATTGTAGTTC
3' ss Score
8.24
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AAGTTGATGGATAGGTTTGATTTTGGAGAAGATTCTGAGCATAGTGAAGAACCCAAAAAGGAAATTCCAGCTTCTCAACT
Seq A exon
TTCTCATGTTTCGGAATCTGTGAACAATTCCATCTTTCATCAGATAGCAGAACAATTGCAGCAGCAAAACCTTGAACATCTCAGACAGCAACTCCTGGAACAGCAGCAGCCTCAAAAG
Seq C2 exon
GCAACTCCTCAGGATAGTCAAGAAGGAACATTTGGGTCAGAACATTCTGCATCACCGTCACAAGGGAGCAGTCAGCAGCATTTCCTTGAACCTGAAGCAAATTTGGATGATTCTATAGATATTCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031917-'12-12,'12-11,15-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.600 C2=1.000
Domain overlap (PFAM):
C1:
PF100254=DUF2267=FE(18.6=100)
A:
PF100254=DUF2267=FE(27.9=100)
C2:
PF100254=DUF2267=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTTGATGGATAGGTTTGATTTTGG
R:
AGAATCATCCAAATTTGCTTCAGGT
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]