GgaEX1050990 @ galGal3
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
NA
Coordinates
chr3:52242133-52245304:+
Coord C1 exon
chr3:52242133-52242212
Coord A exon
chr3:52242609-52242726
Coord C2 exon
chr3:52245173-52245304
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAAAAATTCTTTGTTTTTAGGCC
3' ss Score
8.08
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGCTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
Seq A exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
Seq C2 exon
GCAAGCCCTGAGGAAAATCAGGAAGGGAATTTTGGTTCAGAGCACTCTGCATCACCATCACAAGGGAGCAGTCAACAGCAGTTTTTAGAAGCAGAAACAAATGTAGATGATTCAATGGATATTCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635-'10-16,'10-14,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.850 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGGACAGGTTTGACTT
R:
ATTGAATCATCTACATTTGTTTCTGC
Band lengths:
194-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]