RnoEX6000745 @ rn6
Exon Skipping
Gene
ENSRNOG00000016919 | Scaf8
Description
SR-related CTD-associated factor 8 [Source:RGD Symbol;Acc:708362]
Coordinates
chr1:44067233-44076018:+
Coord C1 exon
chr1:44067233-44067314
Coord A exon
chr1:44068956-44069073
Coord C2 exon
chr1:44075887-44076018
Length
118 bp
Sequences
Splice sites
3' ss Seq
ACCCTTTGTTTCTCATTTAGCTC
3' ss Score
9.21
5' ss Seq
AAGGTCCGT
5' ss Score
6.16
Exon sequences
Seq C1 exon
AGAAGTTGATGGATAGATTTGATTTTGGGGAAGATTCTGAGCATAGTGAAGAATCCAAAAAGGAAATTCCTACTCCTCAACT
Seq A exon
CTCTCACGTTTCTGAGTCTGTGAACAACTCCATCTTCCATCAGATAGCAGAACAGCTGCAGCAGCAGAACCTGGAGCAGTTGCGGCAGCAGCTCCTGGAGCAGCAGCAGCCTCAGAAG
Seq C2 exon
GTAACTCCTCAGGACAGCCAGGAGGGAGCATTTGGCTCTGAGCACTCAGCTTCACCCTCACAAGGGAGTAGCCAACAGCATTTTCTGGAACCTGAAGCAAATTTAGATGATTCCATAGACATTCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016919-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.625 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATGGATAGATTTGATTTTGGGG
R:
CTGTTGCTGAATGTCTATGGAATCA
Band lengths:
210-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]