DreEX6056185 @ danRer10
Exon Skipping
Gene
ENSDARG00000100056 | scaf8
Description
SR-related CTD-associated factor 8 [Source:ZFIN;Acc:ZDB-GENE-030131-3703]
Coordinates
chr17:48851102-48853780:+
Coord C1 exon
chr17:48851102-48851181
Coord A exon
chr17:48851268-48851388
Coord C2 exon
chr17:48853649-48853780
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTTCTTATTATCTCTCTCAGACC
3' ss Score
7.87
5' ss Seq
AAGGTACAA
5' ss Score
6.82
Exon sequences
Seq C1 exon
AAGCTGCTGGGTCAGTTTGATTTCGGGAATGAGTCTGAACACAGCGAGGATTCGAAGAAAGATTCTGCGTCCTCTCAGAT
Seq A exon
ACCTGTGCTGTCAGATTCCATCAACAGCTCAATATTTCATCAGCTGGCGGAGCATCTTCAGCAGCAAAACCTCGAGCAGTTTCAGAAACAGCTAATGGAGCACCAACAGCATCAACAGAAG
Seq C2 exon
TCTATGAGCATGGAGAGCCAGGACGCTATTTTTGGCACTGAAAATTCTGCCCCATCTGGCCAGAGCAGCGCCCCGTCACAGCACCAAGTTCAAGAATCAAAAATGGATGATTCCATGGACAACCAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100056-'5-9,'5-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.815 A=0.732 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064956=Transformer=PU(5.0=15.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTGGGTCAGTTTGATT
R:
CTGTTGTTGGTTGTCCATGGA
Band lengths:
211-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]