HsaEX6050110 @ hg19
Exon Skipping
Gene
ENSG00000213079 | RBM16
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:20959]
Coordinates
chr6:155124678-155129335:+
Coord C1 exon
chr6:155124678-155124757
Coord A exon
chr6:155126503-155126620
Coord C2 exon
chr6:155129204-155129335
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCACCTGTTTTTCCTTTTAGTTC
3' ss Score
10.81
5' ss Seq
AAGGTTTAT
5' ss Score
4.64
Exon sequences
Seq C1 exon
AAGTTGATGGATAGGTTTGATTTTGGGGAAGACTCTGAGCATAGTGAAGAACCCAAAAAGGAAATTCCAGCTTCACAACT
Seq A exon
TTCTCACGTTTCAGAATCTGTGAACAATTCCATTTTTCATCAGATAGCAGAACAACTACAACAGCAAAACCTAGAACATCTCAGACAGCAGCTCTTGGAGCAGCAACAGCCTCAAAAG
Seq C2 exon
GCCACTCCTCAGGATAGTCAGGAAGGAACCTTTGGGTCAGAGCATTCAGCGTCACCATCACAAGGGAGTAGTCAGCAGCATTTTCTTGAACCTGAAGTCAATTTGGATGATTCCATAGATATTCAGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000213079-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.963 A=0.625 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGATGGATAGGTTTGATTTTGGGG
R:
CTGTTGCTGAATATCTATGGAATCA
Band lengths:
210-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)