GgaEX1050990 @ galGal4
Exon Skipping
Gene
ENSGALG00000013635 | SCAF8
Description
SR-related CTD-associated factor 8 [Source:HGNC Symbol;Acc:HGNC:20959]
Coordinates
chr3:49621123-49631973:+
Coord C1 exon
chr3:49621123-49621202
Coord A exon
chr3:49621599-49621716
Coord C2 exon
chr3:49631829-49631973
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAAAAATTCTTTGTTTTTAGGCC
3' ss Score
8.08
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
AAGCTGATGGACAGGTTTGACTTTGGGGAAGAATCTGAACAAAATGAAGAGCCTAAAAAGGAAACTCCCACTTCCCAACT
Seq A exon
GCCTTTAGTACCAGAATCTGTGAACAACTCACTTTTTCACCAACTAGCTGAACAACTGCAGCAACAAAATTTAGAACATCTCAGACAACAACTTCTGGAGCAACAGCAGCCTCAAAAG
Seq C2 exon
ATTCCAGTAGCTCCAGCTGTGCCTGCTGTTAGCTTAGTTCCACCTGCATTTCCTGTCACAATGTCTGTCCCTCCTCCTGGTTATAGTGCCATTCCTCCTCCACCCTTCTTGCGAGCAAGTTTCAATCCTTCACAGCCACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013635_MULTIEX1-5/13=4-13
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.812 C2=0.412
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACAGGTTTGACTTTGGGG
R:
CTGGAGGTGGCTGTGAAGGAT
Band lengths:
218-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]