BtaEX6053986 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016800 | SEMA6D
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D [Source:HGNC Symbol;Acc:HGNC:16770]
Coordinates
chr10:62877834-62920660:-
Coord C1 exon
chr10:62920367-62920660
Coord A exon
chr10:62878339-62878502
Coord C2 exon
chr10:62877834-62877945
Length
164 bp
Sequences
Splice sites
3' ss Seq
ACACTCGTTCTGTTTTCCAGGTA
3' ss Score
10.99
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCCACCCGGCGCCCGGGTTTCTCTTCCCAGCCACTCTCCCCCGCAACTTTCCGTGCTTTGTTCTCCCGCTGGAAATGATTTACGGAAGCGTCTTGGACAGGGTCTCCGCCAGGCGGCAAGAGCCCAGCGCTGAGATGTGTTACGTTCTCATCTACCCATCAATTATGGATGGAAACAAATAAGGAAGAGTCAATTTTGCATGAGCCCCTTCTCCGGCGGCTAGAGGCATCCGCAGCCGGGAGGGAGCCGCCGCGCGCGTCGGCAGCTGCTGGCAAGGGGGATGGTGAGGAGAAG
Seq A exon
GTAGCTAAGTGGACTCTCTGAGGAGGGGCTGCTCTGCCTTCACGTTGGCCCAACCATGAGGTTCTTCCTGCTCTGTGCCTACATGCTGCTGCTACTGATTTCCCAGTTGAGGGCAGTCAGCTTTCCTGAAGATGATGAACCCCTTAATACTGTTGACTATCACT
Seq C2 exon
ATTCAAGGCAATATCCGGTTTTTAGAGGACGTCCTTCAGGCAATGAATCACAGCACAGGCTGGACTTTCAGCTGATGTTGAAAATTCGAGACACACTTTATATTGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016800-'2-2,'2-0,8-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(3.8=42.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCGTCTTGGACAGGGTCTC
R:
TTCATTGCCTGAAGGACGTCC
Band lengths:
256-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]