DreEX6066456 @ danRer10
Exon Skipping
Gene
ENSDARG00000011533 | sema6dl
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like [Source:ZFIN;Acc:ZDB-GENE-050417-171]
Coordinates
chr18:40364806-40376745:+
Coord C1 exon
chr18:40364806-40364854
Coord A exon
chr18:40374489-40374654
Coord C2 exon
chr18:40376634-40376745
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTGTGTGTTGCAGGTA
3' ss Score
12.26
5' ss Seq
ACTGTAAGA
5' ss Score
4.8
Exon sequences
Seq C1 exon
GAGTTGTTGCGATCCAAATCGCGTAAAGAAAATCACGGATTCAGATGAG
Seq A exon
GTAACATTTACATAAGTGCAGTACAGGAGGTGTTTGCCCTCTGTGCCAGCGATGGGGTGGCGAGAACTGACGATTGACCTGCTGATACTCCTGCTGGTGGCGTCCCGTCTGGATGCTGTGAGCTTTCCTGAGGACAACATCCCTTTAGACGTTGTGGACAGACACT
Seq C2 exon
ATGCACGGCAGTACCCGGTGTTTCGTGGACGTCCCTCTGGTAACGAATCTCAGCACAGACTGGACTTTCAGCTGATGACCCAGATACATGATACGCTGTTCATCGCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011533-'0-4,'0-1,2-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(12.5=44.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAATCGCGTAAAGAAAATCACG
R:
CCGCGATGAACAGCGTATCAT
Band lengths:
146-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]