BtaEX6055855 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19138192-19140472:+
Coord C1 exon
chr12:19138192-19138411
Coord A exon
chr12:19138921-19139020
Coord C2 exon
chr12:19140379-19140472
Length
100 bp
Sequences
Splice sites
3' ss Seq
AACTTTGTTTTCCTTTTCAGAGG
3' ss Score
10.82
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GAAGATTACTAAGCAGATCTGACACTGAGAAACCTGATGCTATTGATGAAAATGGAAAAGAAGAGAATATTATGAAAAATATGTTTTCCAGAAAGAGGAAAATAGAAGTTGCAGATTGTGAGGTTGAAGTTATCCCAATAGAACTGGAAGCACGTCCTAGAAGTATGGAGACTCAGGAGTATCCACCTAAGCTCCATAATAATACCAAAGAGCCTATTAC
Seq A exon
AGGAATGAAATATAACAGCATTTCAAGAATTCGATATCATTCTGTCATAAGAAGTCCTAAAACCAAGACCGTCATTATTCAACACAATGGGAAAAATATG
Seq C2 exon
GGATTTACTTCCTCAGAGTCTGTCACCTCAGAAGATAATGGGGAACTTAATCCAGCTCAAGTACATCTGAACTCTAAAGCCAAGGAAATGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.541 A=0.529 C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(23.5=100)
A:
PF0085623=SET=FE(10.6=100)
C2:
PF0085623=SET=FE(10.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAGATCTGACACTGAGAAACC
R:
TCTGAGGTGACAGACTCTGAGG
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]