GgaEX7001257 @ galGal4
Exon Skipping
Gene
ENSGALG00000017006 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr1:168514804-168517699:+
Coord C1 exon
chr1:168514804-168515020
Coord A exon
chr1:168516340-168516424
Coord C2 exon
chr1:168517597-168517699
Length
85 bp
Sequences
Splice sites
3' ss Seq
CCTTTGAACTCCCTATACAGAAT
3' ss Score
7.5
5' ss Seq
ATGGTAATG
5' ss Score
5.46
Exon sequences
Seq C1 exon
GCAGGTTAATGAGCAGAGCTGAAGTTCAAGAGCTGGGAGGTGCTGATCAAGACTTGAAGGAGGAGAGTGCTGTGAATGACAGAGGGCAAAGCTTCTTCTCCAAAAAAAGAAAACTCGACTCCAGCTGTTCAGACTCTGAGATTGAACTCGTGCTGACTGGCAAAGATGACATTCTTGAGCATCAGCAGTCTGCTGTTAATGAAAATGACTCAACTCC
Seq A exon
AATTCATCCAAGGAATTTGAATACTGCAGCCACGAGAAGGCTTGGAACTAGAATAGCTGTTGTGGATAATCACCAGCTGAAAATG
Seq C2 exon
GAAGTCGATACACTGGTGCACAGTGCTGGCTCAGATGAAGATAATAGTTCTCAGCCTCAGCAGTCAAGTGAAACAGAACTGACAAGTGGGACAAACAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006-'19-14,'19-12,20-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=0.552 C2=1.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(33.0=100)
A:
PF0085623=SET=FE(12.8=100)
C2:
PF0085623=SET=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCCAGCTGTTCAGACT
R:
CACTTGACTGCTGAGGCTGAG
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]