MmuEX6041864 @ mm9
Exon Skipping
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60030928-60032516:-
Coord C1 exon
chr14:60032318-60032516
Coord A exon
chr14:60031549-60031648
Coord C2 exon
chr14:60030928-60031021
Length
100 bp
Sequences
Splice sites
3' ss Seq
ACTTTTCTTTTCCTTTTCAGGGA
3' ss Score
13.32
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GAAGGTTACTGCGCAGAGCCACTCCTGAGAAAACTAATATAGGTGAAAATGGAAGAGAGCAACAGCACATTGTGAAAAATTCATTTTCCAAAAAGAGGAAACTAGAAGTTGTGTGTTCAGATTGTGACGCACACTGTGACAGTCCTAAGGCTGAGGACTGCCCTCCCAAGCTTAGTGGTGATCTCAAAGAGCCCGCTGT
Seq A exon
GGAAATGAACCATAGAAATATTTCAAGAACTCAGCATCATTCAGTCATTAGAAGAACTAAATCCAAGACAACTGTTTTTCATTACAGTGAGAAAAACATG
Seq C2 exon
GGATTTGTTTGCTCAGATTCTGCCGCCCCAGAAGATAAGAATGGATTTAAACCAGCTCAAGAACACGTGAACTCTGAAGCTAGGAGAGCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.463 A=0.735 C2=0.906
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(21.4=100)
A:
PF0085623=SET=FE(10.7=100)
C2:
PF0085623=SET=FE(10.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGCCACTCCTGAGAAAA
R:
TCACGTGTTCTTGAGCTGGTT
Band lengths:
257-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: