RnoEX0079927 @ rn6
Exon Skipping
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39720887-39722700:-
Coord C1 exon
chr15:39722502-39722700
Coord A exon
chr15:39721615-39721714
Coord C2 exon
chr15:39720887-39720980
Length
100 bp
Sequences
Splice sites
3' ss Seq
AACTTTTCTTTTCCTTTCAGGGA
3' ss Score
11.58
5' ss Seq
ATGGTAAAA
5' ss Score
4.79
Exon sequences
Seq C1 exon
GAAGGTTACTGAGCAGAGCCACTCCTGAGAAAACTAACATTGGTGAAAGTGAAAGTGAGCAGCAGCACACCGTGAAAAATTCATTCTCTAAAAAGAGGAAAATAGAAGTTGTATGTTCAGATCGTCAAACACACTGTGAAAGTCCTAAAACTGAGGGATGTCCTCCTAAGTTTAGCAGTGATCTCGAAGAGCCCGTTGT
Seq A exon
GGAAATGAATAATAGAAATATTTCAAGAACTCAGCGTCATTCAGTCATTAGAAGACCTAAATCCAAGACAGATGTTTTTCATTACAATGAGAAAAACATG
Seq C2 exon
GGATTCGTTTGCTCATATTCTGCTGCCCCAGAAGAGAAGAATGGATTTAAACCAGCTCAAGAACACCTGGACTCTAAAGCTAGGAGAGCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.735 C2=0.695
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(21.4=100)
A:
PF0085623=SET=FE(10.7=100)
C2:
PF0085623=SET=PD(18.2=84.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTACTGAGCAGAGCCACT
R:
TCCATTCTTCTCTTCTGGGGCA
Band lengths:
242-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]