BtaEX6056494 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025428 | ATP8A2
Description
ATPase, aminophospholipid transporter, class I, type 8A, member 2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr12:33478521-33483536:+
Coord C1 exon
chr12:33478521-33478590
Coord A exon
chr12:33482957-33483084
Coord C2 exon
chr12:33483425-33483536
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTGTGATTTTATTTTGTAGGCT
3' ss Score
10
5' ss Seq
AAGGTATCA
5' ss Score
7.22
Exon sequences
Seq C1 exon
TGAACCTCAGGCAACATGTTTTGTTGCAACATCTAATCTGGATGGAGAGACGAATCTAAAAATACGGCAG
Seq A exon
GCTTTATCAGAAACAGCTACCATGAAAACAGAAAAGCAATTGTCAAACCTATCTGGAAAAATAAAATGTGAAGAGCCTAATTTTCATTTCAACAGTTTTGCGGGAACTTTATACCTAAATGAGAAAAG
Seq C2 exon
CCCCATTTCAATTGGGCCTGACCAGGTCTTGCTGAGAGGCACACAGCTTAAAAATACTGAGTGGATCCTGGGCATAGTCGTTTACACTGGATTTGAAACGAAATTCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025428-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0012215=E1-E2_ATPase=FE(8.3=100)
A:
PF0012215=E1-E2_ATPase=FE(15.2=100)
C2:
PF0012215=E1-E2_ATPase=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGGCAACATGTTTTGT
R:
TGCATGAATTTCGTTTCAAATCCAGT
Band lengths:
178-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]