BtaEX6057086 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78391403-78403332:+
Coord C1 exon
chr12:78391403-78391567
Coord A exon
chr12:78400221-78400421
Coord C2 exon
chr12:78403069-78403332
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTGTTATCTTCCTTTAACAGCCC
3' ss Score
10.3
5' ss Seq
GAGGTACTT
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGCCGTTGTTCAAGAGAGAACTGCAAGTATCTTCACCCTCCCACACACTTAAAAACTCAACTAGAAATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCCATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACCCCACTCCATCCCGTG
Seq A exon
CCCACTTTTCCTGTAGGTCCCGCAATAGGGACAAATACGGCGATTAGCTTTGCTCCTTACTTAGCACCTGTAACCCCTGGAGTTGGGTTAGTCCCAACGGAAATTCTACCCACCACACCTGTTATTGTTCCCGGAAGTCCACCTGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACGGACAAACTGGAG
Seq C2 exon
GTCTGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACCGACTGCCGCTTTGCACACCCCGCCGACAGCACCATGGTCGACACAAACGACAACAGCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313-'9-14,'9-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.286 A=0.496 C2=0.199
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAGTATCTTCACCCTCCCA
R:
ATTTCTCCCTCATGCAACGCC
Band lengths:
295-496
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]