RnoEX0053020 @ rn6
Exon Skipping
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105743545-105764288:+
Coord C1 exon
chr15:105743545-105743709
Coord A exon
chr15:105753396-105753596
Coord C2 exon
chr15:105764135-105764288
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTGTTGTTTTCCTTTGACAGCCC
3' ss Score
9.22
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCAACACACCTAAAAACTCAGCTAGAAATCAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTCATGTTTCCAGGAACACCGCTCCACCCTGTG
Seq A exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCCATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTGGGGTTAGTCCCAACAGAGGTTCTACCCACCACACCTGTCATTGTTCCGGGAAGTCCGCCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACCGATAAACTGGAG
Seq C2 exon
GCCTTCCCTCCCGGTGCTCTTCACCCTTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGAGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTTTGACCAGTGCGCAGTTGCAGCAACACACGGCGTTCATTCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737_MULTIEX1-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTGTTCAAGAGAGAACT
R:
GTGTGTTGCTGCAACTGCG
Band lengths:
301-502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]