Special

MmuEX0028105 @ mm10

Exon Skipping

Gene
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120379150-120396604:+
Coord C1 exon
chr14:120379150-120379314
Coord A exon
chr14:120385391-120385591
Coord C2 exon
chr14:120396451-120396604
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTCCTTCGACAGCCC
3' ss Score
8.21
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCGACACACTTAAAAACCCAGCTAGAGATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACGCCGCTCCATCCTGTG
Seq A exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTTGGGTTAGTCCCAACAGAGGTTCTACCCACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAG
Seq C2 exon
GCCTTCCCTCCGGGTGCTCTTCATCCCTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGGGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTCTGACCAGTGCGCAGCTGCAGCAGCACACGGCGTTCATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139_MULTIEX2-1/6=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (disopred):
  C1=0.309 A=0.516 C2=0.188
Domain overlap (PFAM):

C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTGTTCAAGAGAGAACT
R:
GAACGCCGTGTGCTGCTG
Band lengths:
308-509
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types