DreEX0045307 @ danRer10
Exon Skipping
Gene
ENSDARG00000018460 | mbnl2
Description
muscleblind-like splicing regulator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-9582]
Coordinates
chr1:1981381-2043162:+
Coord C1 exon
chr1:1981381-1981837
Coord A exon
chr1:2038342-2038542
Coord C2 exon
chr1:2042908-2043162
Length
201 bp
Sequences
Splice sites
3' ss Seq
ATAATAATCTTTCTTCGCAGCCT
3' ss Score
8.49
5' ss Seq
GAGGTAATG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CGCAACCGTCTGGCTCAAGAACGTTTGGAGACCTGGAGCATGTTCTTATTGTCGCGCCAGTGTTGTGCACCTGGGACTAAATGACTGATGAACAACTTGGCAGAGATTGACAGCTTCACTGATAGCGGGCATCTCCAATGCGACAGCCACGGGGGCTCTGAATGTGACATCTCTATTTAAAGGGCCTCGCCAAACAAACTGAGACCAACCTCAAAAGTACAGCAACACACAAACGCGCAGACTATTTCAACCCAAATCAACAGACAACATTCACAACACAACTATGGCTTTAAACATCGCATCGATACGAGACACAAAATGGCTGACTCTGGAGGTGTGCCGGCAGTTTCAGAGAGGGACGTGTTCGCGCAGCGACGAGGAATGCAAATTCGCACATCCGCCCAAAAGCTGCCAGGTGGAGAACGGACGGGTGATCGCCTGCTTCGACTCGCTGAAG
Seq A exon
CCTACATTTCCTGTGAGTCAAGGTCTGGGCTCGAACCCAGGTCTGAGTTACGCGCCGTATCTGACTCCCATGAGCCACGGCATGGGTCTGGTCCCCACAGAGATGCTCCCCAGCACCCCAGTCATCGTCCCGGGCAGTCCTCCAGTCAGCGTGCCCAGCTCGTCCTCCACGCAGAAACTACTGCGCACAGACAAGCTGGAG
Seq C2 exon
GTGTGCCGTGAGTTTCAGCGGGGTAACTGCGCGCGCGGCGAGACCGACTGCCGCTTCGCCCATCCTAGCGACAGCCCGATGATCGACACGAGCGACAACACGGTCACGGTGTGCATGGACTACATCAAGAGCCGCTGCTCACGCGAGAAGTGCAAGTATTTCCACCCTCCAGCGCACCTGCAGGCCAAGATCAAAGCAGCGCAGCATCAGGCCAACCAGACCGCCGTCGCAGCGCAGGCCGCCGCTGCAGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018460_MULTIEX1-3/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.125 A=0.657 C2=0.210
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
PF149201=MTBP_C=PU(29.8=67.2),PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF149201=MTBP_C=FE(55.6=100),PF0064219=zf-CCCH=PD(81.5=25.9)
Other Inclusion Isoforms:
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGCTGACTCTGGAGGTGT
R:
TACTTGCACTTCTCGCGTGAG
Band lengths:
298-499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]