MmuEX0028105 @ mm9
Exon Skipping
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120778372-120795826:+
Coord C1 exon
chr14:120778372-120778536
Coord A exon
chr14:120784613-120784813
Coord C2 exon
chr14:120795673-120795826
Length
201 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTTTCCTTCGACAGCCC
3' ss Score
8.21
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCGACACACTTAAAAACCCAGCTAGAGATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACGCCGCTCCATCCTGTG
Seq A exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTTGGGTTAGTCCCAACAGAGGTTCTACCCACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAG
Seq C2 exon
GCCTTCCCTCCGGGTGCTCTTCATCCCTTACCAAAGAGACAAGCACTTGAAAAAAGCAACGGGGCCAGCACGGTCTTCAACCCCAGCGTCTTGCACTACCAGCAGGCTCTGACCAGTGCGCAGCTGCAGCAGCACACGGCGTTCATCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139_MULTIEX3-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.714 A=0.843 C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGCTGTTCAAGAGAGAACT
R:
GAACGCCGTGTGCTGCTG
Band lengths:
308-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: