BtaEX6057087 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78336155-78400421:+
Coord C1 exon
chr12:78336155-78336932
Coord A exon
chr12:78391403-78391567
Coord C2 exon
chr12:78400221-78400421
Length
165 bp
Sequences
Splice sites
3' ss Seq
ACTCTTTTTTTCTCCCCCAGGGC
3' ss Score
12.52
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGCCATGATATTGAGGTCACTTTATTAAAAACAGTTGTGTCTGCGAAACGATCAGGAGACTTGGACGTTTACAGTCAGAGATGACACTGAGCATGCTTTTATTGCGGCCCGCAGTCTTCGAGTGGGGCATATTGATTGATGAGTGACTGCCTGCCGATAAATTTTCTCCGCGCTCTGTATCCTGGATTGGACTTCATTAAGCAATTTATCACTTACCTTCAGACTTACATGTGGGATTTTTCACAACAATAGTTTTGGAATCATTGGAACTTGGATTGATTTCACCATTTAGCAGGGAGGAACAGGATCCCAGTTATTTTCTCATCATGGCTTTGAATGTTGCCCCCGTCAGAGACACAAAATGGCTGACATTAGAGGTTTGCAGACAGTTCCAGAGAGGAACCTGCTCCCGCTCTGATGAGGAATGCAAATTCGCCCACCCCCCCAAAAGCTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTAAAG
Seq A exon
GGCCGTTGTTCAAGAGAGAACTGCAAGTATCTTCACCCTCCCACACACTTAAAAACTCAACTAGAAATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCCATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACCCCACTCCATCCCGTG
Seq C2 exon
CCCACTTTTCCTGTAGGTCCCGCAATAGGGACAAATACGGCGATTAGCTTTGCTCCTTACTTAGCACCTGTAACCCCTGGAGTTGGGTTAGTCCCAACGGAAATTCTACCCACCACACCTGTTATTGTTCCCGGAAGTCCACCTGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACGGACAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313-'7-13,'7-10,9-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.155 A=0.286 C2=0.496
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGAATGCAAATTCGCCCA
R:
TTCTGAGTTGCAGTTGAGCCC
Band lengths:
258-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]