GgaEX0025046 @ galGal3
Exon Skipping
Gene
ENSGALG00000016890 | A3F958_CHICK
Description
NA
Coordinates
chr1:149572397-149617443:-
Coord C1 exon
chr1:149617191-149617443
Coord A exon
chr1:149576239-149576403
Coord C2 exon
chr1:149572397-149572597
Length
165 bp
Sequences
Splice sites
3' ss Seq
AGTGTGACTTCTTTTTCCAGGGT
3' ss Score
8.47
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
CCTTCACCAGTAAGTTTGGAAATTTCTTTGGCCTAATTCACTTGACGGCCATTCACAAGTTCTACATCAGCCTTTCATCATGGCTTTGAATGTTGCTCCTGTAAGAGATACAAAATGGCTAACGTTAGAAGTGTGCAGACAGTTTCAGAGGGGAACTTGTTCACGCTCTGATGAAGAATGCAAATTTGCACATCCCCCTAAAAGTTGCCAGGTTGAAAATGGAAGAGTTATTGCCTGCTTTGATTCCTTAAAG
Seq A exon
GGTCGTTGTACAAGGGAGAACTGCAAGTACCTTCACCCACCAACGCATTTAAAAACTCAACTGGAAATCAATGGCAGGAACAACTTAATCCAACAAAAAACTGCAGCAGCTATGCTTGCACAGCAAATGCAGTTCATGTTTCCAGGAACCCCACTACAGCCAGTG
Seq C2 exon
CCCACATTTCCAGTGGGTCCCACAATAGGAACGAACACGGCTATTAGCTTTGCTCCGTACCTAACGCCAGTAACACCAGGAGTTGGCTTAGTCCCGACTGAGATCCTGCCCACGCCACCCGTCATTGTTCCTGGAAGCCCACCGGTTTCAGTCCCTGGTTCTACTGCTACTCAGAAACTCCTCAGGACTGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890-'1-3,'1-1,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.138 A=0.673 C2=0.836
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTAATTCACTTGACGGCCA
R:
TCGTTCCTATTGTGGGACCCA
Band lengths:
257-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]