RnoEX0053019 @ rn6
Exon Skipping
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105687771-105753596:+
Coord C1 exon
chr15:105687771-105688392
Coord A exon
chr15:105743545-105743709
Coord C2 exon
chr15:105753396-105753596
Length
165 bp
Sequences
Splice sites
3' ss Seq
CCAGATTGTCCGTTTTGCAGGGC
3' ss Score
6.69
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
CATCGTATTGAAGTCACTTTATTAAGGAGGGGGTGTATCCACAAAAACCGTCAGGAGACCAGAACCCTGGGAGCCGGAGATGACAGTGAGTACACATTGCTTGTGGCTCACAGTCTTCCAGCGGGGCCTGTGGATCGGTGACTGACTTCCTGCTTGCTGACACATTTCCCCTCCCCGGTTTCCTGGATTGAACTGCATCAAGGAATTCATTACTTACCTTCCAACTTTCATGTTGGAGTTTTCACGGCAGTAGTTTCGAGATCCTTGAGACTTGGATTGATTCCATCACTTAACACAAAGGAACCGAGCCCAAAGTAGTTCTCATCATGGCCTTGAACGTTGCCCCCGTGAGAGACACAAAGTGGCTGACGCTGGAAGTCTGCAGACAGTACCAGAGAGGAACGTGCTCACGCTCCGATGAAGAATGCAAATTCGCTCACCCCCCAAAAAGTTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTCAAG
Seq A exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCAACACACCTAAAAACTCAGCTAGAAATCAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTCATGTTTCCAGGAACACCGCTCCACCCTGTG
Seq C2 exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCCATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTGGGGTTAGTCCCAACAGAGGTTCTACCCACCACACCTGTCATTGTTCCGGGAAGTCCGCCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACCGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
ENSRNOT00000014300fB8465
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGGAACCGAGCCCAAAGT
R:
CTAATGGCCGCATTTGTCCCT
Band lengths:
252-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]