MmuEX6043164 @ mm10
Exon Skipping
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120324794-120385591:+
Coord C1 exon
chr14:120324794-120325412
Coord A exon
chr14:120379150-120379314
Coord C2 exon
chr14:120385391-120385591
Length
165 bp
Sequences
Splice sites
3' ss Seq
CTAGATTGTCCGTTTTGCAGGGC
3' ss Score
6.17
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GCCATCGTATTAAAGCCACTTTATTAAGGAGGGGTGTATCTGCAAAACAGTCAAGAGACTAGAACCCTGGGAGCCAGAGATGACAGTGAGCACGCACTGCTTGTGGCTCACAGTCTTCCAGTGGGGCCTATCGATCGGTGACTGACTTCCTGCTTGCTGACACATTCCCCCTCCCCGGTTTCCTGGATTGGACTGCATTAAAGAATTCACTGCTTACCTTCAAACTTACATGTTGGAGTTTTCACGGCGGTTGTTTTGAGATCATTGAGACTCGGATTGATTTCGACATTTAACCGAAAGGAACAGAGCCCAAAGTAGTTCTCATCATGGCCTTGAACGTTGCCCCCGTGAGAGACACAAAGTGGCTGACGCTGGAGGTCTGCAGACAGTACCAGAGAGGAACGTGCTCACGCTCCGACGAAGAATGCAAGTTTGCTCACCCCCCCAAAAGTTGCCAGGTTGAAAATGGAAGAGTAATTGCCTGCTTTGATTCCCTCAAG
Seq A exon
GGCCGCTGTTCAAGAGAGAACTGCAAATATCTTCATCCTCCGACACACTTAAAAACCCAGCTAGAGATTAATGGGAGGAACAATTTGATCCAGCAAAAAACTGCAGCAGCGATGCTTGCCCAGCAGATGCAATTTATGTTTCCAGGAACGCCGCTCCATCCTGTG
Seq C2 exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTTGGGTTAGTCCCAACAGAGGTTCTACCCACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139-'22-17,'22-11,25-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.132 A=0.309 C2=0.516
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=WD(100=43.1)
A:
NO
C2:
PF0064219=zf-CCCH=PU(11.1=4.5)
Main Skipping Isoform:
ENSMUST00000088419fB12628
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTCTGCAGACAGTACCA
R:
CCGGTGTAGTGGGTAGAACCT
Band lengths:
248-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types